sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software

Parallel analysis of RNA ends (PARE) is a technique utilizing high-throughput sequencing to profile uncapped, mRNA cleavage or decay products on a genome-wide basis. Tools currently available to validate miRNA targets using PARE data employ only annotated genes, whereas important targets may be foun...

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Bibliografiske detaljer
Main Authors: Kakrana, Atul, Hammond, Reza, Patel, Parth, Nakano, Mayumi, Meyers, Blake C.
Format: Artigo
Sprog:Inglês
Udgivet: Oxford University Press 2014
Fag:
Methods Online
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC4191380/
https://ncbi.nlm.nih.gov/pubmed/25120269
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gku693
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