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Euclidean sections of protein conformation space and their implications in dimensionality reduction
Dimensionality reduction is widely used in searching for the intrinsic reaction coordinates for protein conformational changes. We find the dimensionality–reduction methods using the pairwise root–mean–square deviation as the local distance metric face a challenge. We use Isomap as an example to ill...
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| Main Authors: | , , , |
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| Formato: | Artigo |
| Idioma: | Inglês |
| Publicado em: |
2014
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| Assuntos: | |
| Acesso em linha: | https://ncbi.nlm.nih.gov/pmc/articles/PMC4177328/ https://ncbi.nlm.nih.gov/pubmed/24913095 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1002/prot.24622 |
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