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R-PASS: A Fast Structure-based RNA Sequence Alignment Algorithm

We present a fast pairwise RNA sequence alignment method using structural information, named R-PASS (RNA Pairwise Alignment of Structure and Sequence), which shows good accuracy on sequences with low sequence identity and significantly faster than alternative methods. The method begins by representi...

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Bibliografiske detaljer
Main Authors: Jiang, Yanan, Xu, Weijia, Thompson, Lee Parnell, Gutell, Robin R., Miranker, Daniel P.
Format: Artigo
Sprog:Inglês
Udgivet: 2011
Fag:
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC3999979/
https://ncbi.nlm.nih.gov/pubmed/24772375
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1109/BIBM.2011.74
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