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A Coarse-Grained Elastic Network Atom Contact Model and Its Use in the Simulation of Protein Dynamics and the Prediction of the Effect of Mutations

Normal mode analysis (NMA) methods are widely used to study dynamic aspects of protein structures. Two critical components of NMA methods are coarse-graining in the level of simplification used to represent protein structures and the choice of potential energy functional form. There is a trade-off b...

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Autores principales: Frappier, Vincent, Najmanovich, Rafael J.
Formato: Artigo
Lenguaje:Inglês
Publicado: Public Library of Science 2014
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Acceso en línea:https://ncbi.nlm.nih.gov/pmc/articles/PMC3998880/
https://ncbi.nlm.nih.gov/pubmed/24762569
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pcbi.1003569
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