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PMS6: A Fast Algorithm for Motif Discovery

We propose a new algorithm, PMS6, for the (l, d)-motif discovery problem in which we are to find all strings of length l that appear in every string of a given set of strings with at most d mismatches. The run time ratio PMS5/PMS6, where PMS5 is the fastest previously known algorithm for motif disco...

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Detalhes bibliográficos
Main Authors: Bandyopadhyay, Shibdas, Sahni, Sartaj, Rajasekaran, Sanguthevar
Formato: Artigo
Idioma:Inglês
Publicado em: 2012
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC3744182/
https://ncbi.nlm.nih.gov/pubmed/23959399
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1109/ICCABS.2012.6182627
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