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On the combinatorics of sparsification

BACKGROUND: We study the sparsification of dynamic programming based on folding algorithms of RNA structures. Sparsification is a method that improves significantly the computation of minimum free energy (mfe) RNA structures. RESULTS: We provide a quantitative analysis of the sparsification of a par...

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Autors principals: Huang, Fenix WD, Reidys, Christian M
Format: Artigo
Idioma:Inglês
Publicat: BioMed Central 2012
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Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC3549849/
https://ncbi.nlm.nih.gov/pubmed/23088372
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1748-7188-7-28
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