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Efficient computation of spaced seeds

BACKGROUND: The most frequently used tools in bioinformatics are those searching for similarities, or local alignments, between biological sequences. Since the exact dynamic programming algorithm is quadratic, linear-time heuristics such as BLAST are used. Spaced seeds are much more sensitive than t...

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Detalhes bibliográficos
Autor principal: Ilie, Silvana
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2012
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC3392737/
https://ncbi.nlm.nih.gov/pubmed/22373455
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1756-0500-5-123
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