Evaluating the Influence of Quality Control Decisions and Software Algorithms on SNP Calling for the Affymetrix 6.0 SNP Array Platform

OBJECTIVE: Our goal was to evaluate the influence of quality control (QC) decisions using two genotype calling algorithms, CRLMM and Birdseed, designed for the Affymetrix SNP Array 6.0. METHODS: Various QC options were tried using the two algorithms and comparisons were made on subject and call rate...

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Autori principali: de Andrade, Mariza, Atkinson, Elizabeth J., Bamlet, William R., Matsumoto, Martha E., Maharjan, Sooraj, Slager, Susan L., Vachon, Celine M., Cunningham, Julie M., Kardia, Sharon L.R.
Natura: Artigo
Lingua:Inglês
Pubblicazione: S. Karger AG 2011
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Original Paper
Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC3136375/
https://ncbi.nlm.nih.gov/pubmed/21734406
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1159/000328843
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