IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming

Motivation: Pseudoknots found in secondary structures of a number of functional RNAs play various roles in biological processes. Recent methods for predicting RNA secondary structures cover certain classes of pseudoknotted structures, but only a few of them achieve satisfying predictions in terms of...

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Bibliografiske detaljer
Main Authors: Sato, Kengo, Kato, Yuki, Hamada, Michiaki, Akutsu, Tatsuya, Asai, Kiyoshi
Format: Artigo
Sprog:Inglês
Udgivet: Oxford University Press 2011
Fag:
Ismb/Eccb 2011 Proceedings Papers Committee July 17 to July 19, 2011, Vienna, Austria
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC3117384/
https://ncbi.nlm.nih.gov/pubmed/21685106
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btr215
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