A fast algorithm for exact sequence search in biological sequences using polyphase decomposition

Motivation: Exact sequence search allows a user to search for a specific DNA subsequence in a larger DNA sequence or database. It serves as a vital block in many areas such as Pharmacogenetics, Phylogenetics and Personal Genomics. As sequencing of genomic data becomes increasingly affordable, the am...

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Hauptverfasser: Srikantha, Abhilash, Bopardikar, Ajit S., Kaipa, Kalyan Kumar, Venkataraman, Parthasarathy, Lee, Kyusang, Ahn, TaeJin, Narayanan, Rangavittal
Format: Artigo
Sprache:Inglês
Veröffentlicht: Oxford University Press 2010
Schlagworte:
Eccb 2010 Conference Proceedings September 26 to September 29, 2010, Ghent, Belgium
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC2935425/
https://ncbi.nlm.nih.gov/pubmed/20823301
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btq364
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