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SMOG@ctbp: simplified deployment of structure-based models in GROMACS

Molecular dynamics simulations with coarse-grained and/or simplified Hamiltonians are an effective means of capturing the functionally important long-time and large-length scale motions of proteins and RNAs. Structure-based Hamiltonians, simplified models developed from the energy landscape theory o...

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Bibliographic Details
Main Authors: Noel, Jeffrey K., Whitford, Paul C., Sanbonmatsu, Karissa Y., Onuchic, José N.
Format: Artigo
Language:Inglês
Published: Oxford University Press 2010
Subjects:
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC2896113/
https://ncbi.nlm.nih.gov/pubmed/20525782
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gkq498
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