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Improved estimation of ligand-macromolecule binding affinities by Linear Response approach using a combination of multi-mode MD simulation and QM/MM Methods

Structure-based predictions of binding affinities of ligands binding to proteins by coordination bonds with transition metals, covalent bonds, and bonds involving charge re-distributions are hindered by the absence of proper force fields. This shortcoming affects all methods which use force-field-ba...

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Detalhes bibliográficos
Main Authors: Khandelwal, Akash, Balaz, Stefan
Formato: Artigo
Idioma:Inglês
Publicado em: 2007
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC2896052/
https://ncbi.nlm.nih.gov/pubmed/17333483
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1007/s10822-007-9104-4
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