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Fine-tuning structural RNA alignments in the twilight zone

BACKGROUND: A widely used method to find conserved secondary structure in RNA is to first construct a multiple sequence alignment, and then fold the alignment, optimizing a score based on thermodynamics and covariance. This method works best around 75% sequence similarity. However, in a "twilig...

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Bibliographic Details
Main Authors: Bremges, Andreas, Schirmer, Stefanie, Giegerich, Robert
Format: Artigo
Language:Inglês
Published: BioMed Central 2010
Subjects:
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC2876130/
https://ncbi.nlm.nih.gov/pubmed/20433706
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-11-222
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