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Homologous over-extension: a challenge for iterative similarity searches

We have characterized a novel type of PSI-BLAST error, homologous over-extension (HOE), using embedded PFAM domain queries on searches against a reference library containing Pfam-annotated UniProt sequences and random synthetic sequences. PSI-BLAST makes two types of errors: alignments to non-homolo...

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Sonraí Bibleagrafaíochta
Main Authors: Gonzalez, Mileidy W., Pearson, William R.
Formáid: Artigo
Teanga:Inglês
Foilsithe: Oxford University Press 2010
Ábhair:
Rochtain Ar Líne:https://ncbi.nlm.nih.gov/pmc/articles/PMC2853128/
https://ncbi.nlm.nih.gov/pubmed/20064877
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gkp1219
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