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Determination of side-chain-rotamer and side-chain and backbone virtual-bond-stretching potentials of mean force from AM1 energy surfaces of terminally-blocked amino-acid residues, for coarse-grained simulations of protein structure and folding. 1. The Method

In this and the accompanying paper, we report the development of new physics-based side-chain-rotamer and virtual-bond-deformation potentials which now replace the respective statistical potentials used so far in our physics-based united-reside UNRES force field for large-scale simulations of protei...

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Autors principals: Kozłowska, Urszula, Liwo, Adam, Scheraga, Harold A.
Format: Artigo
Idioma:Inglês
Publicat: 2010
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Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC2841724/
https://ncbi.nlm.nih.gov/pubmed/20073062
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1002/jcc.21399
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