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Small molecule hydration free energies in explicit solvent: An extensive test of fixed-charge atomistic simulations

Using molecular dynamics free energy simulations with TIP3P explicit solvent, we compute the hydration free energies of 504 neutral small organic molecules and compare them to experiments. We find, first, good general agreement between the simulations and the experiments, with an RMS error of 1.24 k...

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Autors principals: Mobley, David L., Bayly, Christopher I., Cooper, Matthew D., Shirts, Michael R., Dill, Ken A.
Format: Artigo
Idioma:Inglês
Publicat: 2009
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Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC2701304/
https://ncbi.nlm.nih.gov/pubmed/20150953
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/ct800409d
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