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Comprehensive Evaluation of Protein Structure Alignment Methods: Scoring by Geometric Measures

We report the largest and most comprehensive comparison of protein structural alignment methods. Specifically, we evaluate six publicly available structure alignment programs: SSAP, STRUCTAL, DALI, LSQMAN, CE and SSM by aligning all 8,581,970 protein structure pairs in a test set of 2930 protein dom...

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Main Authors: Kolodny, Rachel, Koehl, Patrice, Levitt, Michael
Formato: Artigo
Idioma:Inglês
Publicado: 2005
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Acceso en liña:https://ncbi.nlm.nih.gov/pmc/articles/PMC2692023/
https://ncbi.nlm.nih.gov/pubmed/15701525
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1016/j.jmb.2004.12.032
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