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A new FFT-based algorithm to compute Born radii in the generalized Born theory of biomolecule solvation

In this paper, a new method for calculating effective atomic radii within the generalized Born (GB) model of implicit solvation is proposed, for use in computer simulations of bio-molecules. First, a new formulation for the GB radii is developed, in which smooth kernels are used to eliminate the div...

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Detalhes bibliográficos
Main Authors: Cai, Wei, Xu, Zhenli, Baumketner, Andrij
Formato: Artigo
Idioma:Inglês
Publicado em: 2008
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC2598740/
https://ncbi.nlm.nih.gov/pubmed/20027201
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1016/j.jcp.2008.08.015
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