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Implementations of Nosé–Hoover and Nosé–Poincaré thermostats in mesoscopic dynamic simulations with the united-residue model of a polypeptide chain

Molecular dynamics (MD) simulations generate a canonical ensemble only when integration of the equations of motion is coupled to a thermostat. Three extended phase space thermostats, one version of Nosé–Hoover and two versions of Nosé–Poincaré, are compared with each other and with the Berendsen the...

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Autors principals: Kleinerman, Dana S., Czaplewski, Cezary, Liwo, Adam, Scheraga, Harold A.
Format: Artigo
Idioma:Inglês
Publicat: American Institute of Physics 2008
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Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC2577381/
https://ncbi.nlm.nih.gov/pubmed/18601387
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1063/1.2943146
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