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Pair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes.

We examine the similarities and differences between two widely used knowledge-based potentials, which are expressed as contact matrices (consisting of 210 elements) that gives a scale for interaction energies between the naturally occurring amino acid residues. These are the Miyazawa-Jernigan contac...

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Autori principali: Betancourt, M. R., Thirumalai, D.
Natura: Artigo
Lingua:Inglês
Pubblicazione: Cold Spring Harbor Laboratory Press 1999
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Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC2144252/
https://ncbi.nlm.nih.gov/pubmed/10048329
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