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Choosing the best heuristic for seeded alignment of DNA sequences

BACKGROUND: Seeded alignment is an important component of algorithms for fast, large-scale DNA similarity search. A good seed matching heuristic can reduce the execution time of genomic-scale sequence comparison without degrading sensitivity. Recently, many types of seed have been proposed to improv...

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Detalhes bibliográficos
Main Authors: Sun, Yanni, Buhler, Jeremy
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2006
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC1468433/
https://ncbi.nlm.nih.gov/pubmed/16533404
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-7-133
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