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Folding Very Short Peptides Using Molecular Dynamics

Peptides often have conformational preferences. We simulated 133 peptide 8-mer fragments from six different proteins, sampled by replica-exchange molecular dynamics using Amber7 with a GB/SA (generalized-Born/solvent-accessible electrostatic approximation to water) implicit solvent. We found that 85...

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Detalhes bibliográficos
Main Authors: Ho, Bosco K, Dill, Ken A
Formato: Artigo
Idioma:Inglês
Publicado em: Public Library of Science 2006
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC1435986/
https://ncbi.nlm.nih.gov/pubmed/16617376
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pcbi.0020027
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