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RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers

We present a machine learning method (a hierarchical network of k-nearest neighbor classifiers) that uses an RNA sequence alignment in order to predict a consensus RNA secondary structure. The input to the network is the mutual information, the fraction of complementary nucleotides, and a novel cons...

Ausführliche Beschreibung

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Bibliographische Detailangaben
Hauptverfasser: BINDEWALD, ECKART, SHAPIRO, BRUCE A.
Format: Artigo
Sprache:Inglês
Veröffentlicht: Copyright 2006 by RNA Society 2006
Schlagworte:
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC1383574/
https://ncbi.nlm.nih.gov/pubmed/16495232
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1261/rna.2164906
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