Aligning coding sequences with frameshift extension penalties

Abstract Background Frameshift translation is an important phenomenon that contributes to the appearance of novel coding DNA sequences (CDS) and functions in gene evolution, by allowing alternative amino acid translations of gene coding regions. Frameshift translations can be identified by aligning...

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Bibliographic Details
Main Authors: Safa Jammali, Esaie Kuitche, Ayoub Rachati, François Bélanger, Michelle Scott, Aïda Ouangraoua
Format: Artigo
Language:Inglês
Published: BMC 2017-03-01
Series:Algorithms for Molecular Biology
Subjects:
Coding DNA sequences pairwise alignment
Frameshifts
Dynamic programming
Online Access:http://link.springer.com/article/10.1186/s13015-017-0101-4
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