BioSet2Vec: extraction of k-mer dictionaries from multiple sets of biological sequences via big data technologies

Abstract Background In several contexts involving large collections of sets of biological sequences, a relevant problem is that of selecting significant groups of k-mers that characterize one set with regards to the others in the same collection. Results Here a software framework is proposed impleme...

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Detalles Bibliográficos
Main Authors: Ylenia Galluzzo, Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
Formato: Artigo
Idioma:Inglês
Publicado: BMC 2025-10-01
Series:BMC Bioinformatics
Assuntos:
Biological sequences
k-mer dictionaries
TF-IDF
Big data technologies
Apache Spark
Acceso en liña:https://doi.org/10.1186/s12859-025-06261-7
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