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Protocol to estimate cell type proportions from bulk RNA-seq using DAISM-DNNXMBD

Summary: Computational protocols for cell type deconvolution from bulk RNA-seq data have been used to understand cellular heterogeneity in disease-related samples, but their performance can be impacted by batch effect among datasets. Here, we present a DAISM-DNN protocol to achieve robust cell type...

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Автори: Yating Lin, Shangze Wu, Xu Xiao, Jingbo Zhao, Minshu Wang, Haojun Li, Kejia Wang, Minwei Zhang, Frank Zheng, Wenxian Yang, Lei Zhang, Jiahuai Han, Rongshan Yu
Формат: Artigo
Мова:Inglês
Опубліковано: Elsevier 2022-09-01
Серія:STAR Protocols
Предмети:
Bioinformatics
Sequence analysis
Cell Biology
Flow Cytometry/Mass Cytometry
RNAseq
Immunology
Онлайн доступ:http://www.sciencedirect.com/science/article/pii/S2666166722004671
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