transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation

Abstract Background RNA-seq followed by de novo transcriptome assembly has been a transformative technique in biological research of non-model organisms, but the computational processing of RNA-seq data entails many different software tools. The complexity of these de novo transcriptomics workflows...

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Detalles Bibliográficos

Autores principales:	Timothy R. Fallon, Tereza Čalounová, Martin Mokrejš, Jing-Ke Weng, Tomáš Pluskal
Formato:	Artigo
Lenguaje:	Inglês
Publicado:	BMC 2023-04-01
Colección:	BMC Bioinformatics
Materias:	De novo transcriptome assembly RNA-seq Non-model organisms Transcriptome annotation Differential expression analysis Reproducible software
Acceso en línea:	https://doi.org/10.1186/s12859-023-05254-8
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