KAGE: fast alignment-free graph-based genotyping of SNPs and short indels
Abstract Genotyping is a core application of high-throughput sequencing. We present KAGE, a genotyper for SNPs and short indels that is inspired by recent developments within graph-based genome representations and alignment-free methods. KAGE uses a pan-genome representation of the population to eff...
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| Autori principali: | , , |
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| Natura: | Artigo |
| Lingua: | Inglês |
| Pubblicazione: |
BMC
2022-10-01
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| Serie: | Genome Biology |
| Soggetti: | |
| Accesso online: | https://doi.org/10.1186/s13059-022-02771-2 |
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