Integrating gene expression and imaging data across Visium capture areas with visiumStitched

Abstract Background Visium is a widely-used spatially-resolved transcriptomics assay available from 10x Genomics. Standard Visium capture areas (6.5mm by 6.5mm) limit the survey of larger tissue structures, but combining overlapping images and associated gene expression data allow for more complex s...

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Detalhes bibliográficos

Principais autores:	Nicholas J. Eagles, Svitlana V. Bach, Madhavi Tippani, Prashanthi Ravichandran, Yufeng Du, Ryan A. Miller, Thomas M. Hyde, Stephanie C. Page, Keri Martinowich, Leonardo Collado-Torres
Formato:	Artigo
Idioma:	Inglês
Publicado em:	BMC 2024-11-01
Colecção:	BMC Genomics
Assuntos:	Spatial transcriptomics Visium Multi-capture area study design Image stitching
Acesso em linha:	https://doi.org/10.1186/s12864-024-10991-y
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