Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study

Abstract Background Nesting is common in LTR retrotransposons, especially in large genomes containing a high number of elements. Results We analyzed 12 plant genomes and obtained 1491 pairs of nested and original (pre-existing) LTR retrotransposons. We systematically analyzed mutual nesting of indiv...

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Bibliografische gegevens

Hoofdauteurs:	Pavel Jedlicka, Matej Lexa, Ivan Vanat, Roman Hobza, Eduard Kejnovsky
Formaat:	Artigo
Taal:	Inglês
Gepubliceerd in:	BMC 2019-12-01
Reeks:	Mobile DNA
Onderwerpen:	Transposable elements LTR retrotransposons Nesting Chromatin Nucleosomes Plants
Online toegang:	https://doi.org/10.1186/s13100-019-0186-z
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