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Cellstitch: 3D cellular anisotropic image segmentation via optimal transport

Abstract Background Spatial mapping of transcriptional states provides valuable biological insights into cellular functions and interactions in the context of the tissue. Accurate 3D cell segmentation is a critical step in the analysis of this data towards understanding diseases and normal developme...

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Detalles Bibliográficos
Principais autores: Yining Liu, Yinuo Jin, Elham Azizi, Andrew J. Blumberg
Formato: Artigo
Idioma:Inglês
Publicado: BMC 2023-12-01
Series:BMC Bioinformatics
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Acceso en liña:https://doi.org/10.1186/s12859-023-05608-2
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