SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration

Abstract Motivation Computational RNA secondary structure prediction by free energy minimization is indispensable for analyzing structural RNAs and their interactions. These methods find the structure with the minimum free energy (MFE) among exponentially many possible structures and have a restrict...

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Detalhes bibliográficos

Principais autores:	Mateo Gray, Sebastian Will, Hosna Jabbari
Formato:	Artigo
Idioma:	Inglês
Publicado em:	BMC 2024-03-01
coleção:	Algorithms for Molecular Biology
Assuntos:	RNA MFE Secondary structure prediction Dangle Sparsification Space complexity
Acesso em linha:	https://doi.org/10.1186/s13015-024-00256-4
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