Cascabel: A Scalable and Versatile Amplicon Sequence Data Analysis Pipeline Delivering Reproducible and Documented Results

Marker gene sequencing of the rRNA operon (16S, 18S, ITS) or cytochrome c oxidase I (CO1) is a popular means to assess microbial communities of the environment, microbiomes associated with plants and animals, as well as communities of multicellular organisms via environmental DNA sequencing. Since t...

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Bibliografische Detailangaben

Hauptverfasser:	Alejandro Abdala Asbun, Marc A. Besseling, Sergio Balzano, Judith D. L. van Bleijswijk, Harry J. Witte, Laura Villanueva, Julia C. Engelmann
Format:	Artigo
Sprache:	Inglês
Veröffentlicht:	Frontiers Media S.A. 2020-11-01
Schriftenreihe:	Frontiers in Genetics
Schlagworte:	amplicon sequencing 16S/18S rRNA gene Illumina community profiling microbiome pipeline
Online-Zugang:	https://www.frontiersin.org/articles/10.3389/fgene.2020.489357/full
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