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SeQual-Stream: approaching stream processing to quality control of NGS datasets

Abstract Background Quality control of DNA sequences is an important data preprocessing step in many genomic analyses. However, all existing parallel tools for this purpose are based on a batch processing model, needing to have the complete genetic dataset before processing can even begin. This limi...

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Principais autores: Óscar Castellanos-Rodríguez, Roberto R. Expósito, Juan Touriño
פורמט: Artigo
שפה:Inglês
יצא לאור: BMC 2023-10-01
סדרה:BMC Bioinformatics
נושאים:
Quality control
Big data
Stream processing
Apache Spark
Next generation sequencing (NGS)
גישה מקוונת:https://doi.org/10.1186/s12859-023-05530-7
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