Lessons learned: overcoming common challenges in reconstructing the SARS-CoV-2 genome from short-read sequencing data via CoVpipe2 [version 2; peer review: 2 approved]

Background Accurate genome sequences form the basis for genomic surveillance programs, the added value of which was impressively demonstrated during the COVID-19 pandemic by tracing transmission chains, discovering new viral lineages and mutations, and assessing them for infectiousness and resistanc...

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Hlavní autoři:	Martin Hölzer, Stephan Fuchs, René Kmiecinski, Kathrin Trappe, Marie Lataretu, Oliver Drechsel
Médium:	Artigo
Jazyk:	Inglês
Vydáno:	F1000 Research Ltd 2024-04-01
Edice:	F1000Research
Témata:	SARS-CoV-2 genome reconstruction whole-genome sequencing short reads Illumina amplicons eng
On-line přístup:	https://f1000research.com/articles/12-1091/v2
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