Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

Background As next generation sequence technology has advanced, there have been parallel advances in genome-scale analysis programs for determining evolutionary relationships as proxies for epidemiological relationship in public health. Most new programs skip traditional steps of ortholog determinat...

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Principais autores:	Ruth E. Timme, Hugh Rand, Martin Shumway, Eija K. Trees, Mustafa Simmons, Richa Agarwala, Steven Davis, Glenn E. Tillman, Stephanie Defibaugh-Chavez, Heather A. Carleton, William A. Klimke, Lee S. Katz
Formato:	Artigo
Idioma:	Inglês
Publicado:	PeerJ Inc. 2017-10-01
Series:	PeerJ
Assuntos:	Benchmark datasets Phylogenomics Food safety Foodborne outbreak Salmonella Listeria
Acceso en liña:	https://peerj.com/articles/3893.pdf
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