A bioinformatics pipeline for Mycobacterium tuberculosis sequencing that cleans contaminant reads from sputum samples.

Next-Generation Sequencing (NGS) is widely used to investigate genomic variation. In several studies, the genetic variation of Mycobacterium tuberculosis has been analyzed in sputum samples without previous culture, using target enrichment methodologies for NGS. Alignments obtained by different prog...

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Detalhes bibliográficos

Principais autores:	Betzaida Cuevas-Córdoba, Cristóbal Fresno, Joshua I Haase-Hernández, Martín Barbosa-Amezcua, Minerva Mata-Rocha, Marcela Muñoz-Torrico, Miguel A Salazar-Lezama, José A Martínez-Orozco, Luis A Narváez-Díaz, Jorge Salas-Hernández, Vanessa González-Covarrubias, Xavier Soberón
Formato:	Artigo
Idioma:	Inglês
Publicado em:	Public Library of Science (PLoS) 2021-01-01
coleção:	PLoS ONE
Acesso em linha:	https://doi.org/10.1371/journal.pone.0258774
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