Inference of antimicrobial resistance (AMR) from a whole genome database outperforming AMR gene detection

Summary: This study focuses on the rapid detection of antimicrobial resistance (AMR) in Klebsiella pneumoniae. The “Align-Search-Infer” pipeline aligned query sequences from 24 urine samples against a curated genome database of 40 Klebsiella isolates, searched for the best matches, and inferred thei...

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Détails bibliographiques

Auteurs principaux:	Pornsawan Cholsaktrakool, Kornthara Kawang, Nicha Sangpiromapichai, Pannaporn Thongsuk, Songtham Anuntakarun, Pattapon Kunadirek, Natthaya Chuaypen, Sumanee Nilgate, Naris Kueakulpattana, Ubolrat Rirerm, Tanittha Chatsuwan, Elita Jauneikaite, Frances Davies, Ploy N. Pratanwanich, Sira Sriswasdi, Voraphoj Nilaratanakul
Format:	Artigo
Langue:	Inglês
Publié:	Elsevier 2025-08-01
Collection:	iScience
Sujets:	Natural sciences Biological sciences Microbiology Microbial genomics
Accès en ligne:	http://www.sciencedirect.com/science/article/pii/S2589004225012234
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