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Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds

Abstract Background RNA-sequencing analysis is increasingly utilized to study gene expression in non-model organisms without sequenced genomes. Aethionema arabicum (Brassicaceae) exhibits seed dimorphism as a bet-hedging strategy – producing both a less dormant mucilaginous (M+) seed morph and a mor...

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Main Authors: Per K. I. Wilhelmsson, Jake O. Chandler, Noe Fernandez-Pozo, Kai Graeber, Kristian K. Ullrich, Waheed Arshad, Safina Khan, Johannes A. Hofberger, Karl Buchta, Patrick P. Edger, J. Chris Pires, M. Eric Schranz, Gerhard Leubner-Metzger, Stefan A. Rensing
Format: Artigo
Language:Inglês
Published: BMC 2019-01-01
Series:BMC Genomics
Subjects:
Aethionema arabicum
Dimorphic seeds
Reference and reference-free
RNA-seq
Transcriptome
Online Access:http://link.springer.com/article/10.1186/s12864-019-5452-4
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