NanoCore: core-genome-based bacterial genomic surveillance and outbreak detection in healthcare facilities from Nanopore and Illumina data

ABSTRACT Genomic surveillance enables the early detection of pathogen transmission in healthcare facilities and contributes to the reduction of substantial patient harm. Fast turnaround times, flexible multiplexing, and low capital requirements make Nanopore sequencing well suited for genomic survei...

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Autori principali:	Sebastian A. Fuchs, Lisanna Hülse, Teresa Tamayo, Susanne Kolbe-Busch, Klaus Pfeffer, Alexander T. Dilthey
Natura:	Artigo
Lingua:	Inglês
Pubblicazione:	American Society for Microbiology 2024-11-01
Serie:	mSystems
Soggetti:	microbial genomics bacterial outbreak analysis Nanopore sequencing hybrid approaches MLST healthcare pathogen surveillance
Accesso online:	https://journals.asm.org/doi/10.1128/msystems.01080-24
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