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Whole genome sequencing in the palm of your hand: how to implement a MinION Galaxy-based workflow in a food safety laboratory for rapid Salmonella spp. serotyping, virulence, and antimicrobial resistance gene identification

IntroductionWhole Genome Sequencing (WGS) implementation in food safety laboratories is a significant advancement in food pathogen control and outbreak tracking. However, the initial investment for acquiring next-generation sequencing platforms and the need for bioinformatic skills represented an ob...

Ausführliche Beschreibung

Gespeichert in:
Hauptverfasser: Alexandre Lamas, Alejandro Garrido-Maestu, Alberto Prieto, Alberto Cepeda, Carlos Manuel Franco
Format: Artigo
Sprache:Inglês
Veröffentlicht: Frontiers Media S.A. 2023-12-01
Schriftenreihe:Frontiers in Microbiology
Schlagworte:
Salmonella spp.
whole genome sequencing
MinION
Flongle
serotyping
antimicrobial resistance
Online-Zugang:https://www.frontiersin.org/articles/10.3389/fmicb.2023.1254692/full
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