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STAT: a fast, scalable, MinHash-based k-mer tool to assess Sequence Read Archive next-generation sequence submissions

Abstract Sequence Read Archive submissions to the National Center for Biotechnology Information often lack useful metadata, which limits the utility of these submissions. We describe the Sequence Taxonomic Analysis Tool (STAT), a scalable k-mer-based tool for fast assessment of taxonomic diversity i...

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Principais autores: Kenneth S. Katz, Oleg Shutov, Richard Lapoint, Michael Kimelman, J. Rodney Brister, Christopher O’Sullivan
Format: Artigo
Jezik:Inglês
Izdano: BMC 2021-09-01
Serija:Genome Biology
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Online dostop:https://doi.org/10.1186/s13059-021-02490-0
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