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Flankophile: a bioinformatic pipeline for prokaryotic genomic synteny analysis

ABSTRACT Analysis of flanking region sequences can be useful when comparing mobile prokaryotic sequences from different bacterial isolates or metagenomes. Here, we report a new bioinformatics tool, a pipeline called Flankophile, which can analyze flanking regions and sequence variants. The main feat...

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Autori principali: Alix Vincent Thorn, Frank M. Aarestrup, Patrick Munk
Natura: Artigo
Lingua:Inglês
Pubblicazione: American Society for Microbiology 2024-01-01
Serie:Microbiology Spectrum
Soggetti:
bioinformatics
antibiotics resistance
veterinary microbiology
software
phylogenetic analysis
epidemiology
Accesso online:https://journals.asm.org/doi/10.1128/spectrum.02413-23
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