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Binning Metagenomic Contigs Using Contig Embedding and Decomposed Tetranucleotide Frequency

Metagenomic binning is a crucial step in metagenomic research. It can aggregate the genome sequences belonging to the same microbial species into independent bins. Most existing methods ignore the semantic information of contigs and lack effective processing of tetranucleotide frequency, resulting i...

Ausführliche Beschreibung

Gespeichert in:
Hauptverfasser: Long Fu, Jiabin Shi, Baohua Huang
Format: Artigo
Sprache:Inglês
Veröffentlicht: MDPI AG 2024-09-01
Schriftenreihe:Biology
Schlagworte:
metagenomics
binning
BERT
tetranucleotide
non-negative matrix factorization (NMF)
Approximate Nearest Neighbors Oh Yeah (Annoy)
Online-Zugang:https://www.mdpi.com/2079-7737/13/10/755
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