PMFFRC: a large-scale genomic short reads compression optimizer via memory modeling and redundant clustering

Abstract Background Genomic sequencing reads compressors are essential for balancing high-throughput sequencing short reads generation speed, large-scale genomic data sharing, and infrastructure storage expenditure. However, most existing short reads compressors rarely utilize big-memory systems and...

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Bibliografische Detailangaben

Hauptverfasser:	Hui Sun, Yingfeng Zheng, Haonan Xie, Huidong Ma, Xiaoguang Liu, Gang Wang
Format:	Artigo
Sprache:	Inglês
Veröffentlicht:	BMC 2023-11-01
Schriftenreihe:	BMC Bioinformatics
Schlagworte:	Short reads data Data compression Fastq Parallel algorithm
Online-Zugang:	https://doi.org/10.1186/s12859-023-05566-9
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