The impact of bioinformatic choices on Coccidioides variant identification accuracy

ABSTRACT Emerging fungal pathogens, such as Coccidioides, the causative agent of Valley fever, or coccidioidomycosis, pose significant clinical and public health challenges. While advances in genomic epidemiology have enhanced our understanding of Coccidioides evolutionary history, effective variant...

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Auteurs principaux:	Marco Marchetti, Emanuel M. Fonseca, Kimberly E. Hanson, Bridget Barker, Katharine S. Walter
Format:	Artigo
Langue:	Inglês
Publié:	American Society for Microbiology 2025-10-01
Collection:	Microbiology Spectrum
Sujets:	Coccidioides posadasii Coccidioides immitis fungal genomics repetitive elements species identification variant calling pipeline
Accès en ligne:	https://journals.asm.org/doi/10.1128/spectrum.01232-25
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