GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization

by Chen, Hung-I Harry, Chiu, Yu-Chiao, Zhang, Tinghe, Zhang, Songyao, Huang, Yufei, Chen, Yidong
Published in BMC Syst Biol (2018)

Predicting drug response of tumors from integrated genomic profiles by deep neural networks

by Chiu, Yu-Chiao, Chen, Hung-I Harry, Zhang, Tinghe, Zhang, Songyao, Gorthi, Aparna, Wang, Li-Ju, Huang, Yufei, Chen, Yidong
Published in BMC Med Genomics (2019)

Correction to: Predicting drug response of tumors from integrated genomic profiles by deep neural networks

by Chiu, Yu-Chiao, Chen, Hung-I Harry, Zhang, Tinghe, Zhang, Songyao, Gorthi, Aparna, Wang, Li-Ju, Huang, Yufei, Chen, Yidong
Published in BMC Med Genomics (2019)

MeT-DB V2.0: elucidating context-specific functions of N(6)-methyl-adenosine methyltranscriptome

by Liu, Hui, Wang, Huaizhi, Wei, Zhen, Zhang, Songyao, Hua, Gang, Zhang, Shao-Wu, Zhang, Lin, Gao, Shou-Jiang, Meng, Jia, Chen, Xing, Huang, Yufei
Published in Nucleic Acids Res (2018)

Viral and Cellular N(6)-Methyladenosine (m(6)A) and N(6), 2′-O-Dimethyladenosine (m(6)Am) Epitranscriptomes in KSHV Life Cycle

by Tan, Brandon, Liu, Hui, Zhang, Songyao, da Silva, Suzane Ramos, Zhang, Lin, Meng, Jia, Cui, Xiaodong, Yuan, Hongfeng, Sorel, Océane, Zhang, Shaowu, Huang, Yufei, Gao, Shou-Jiang
Published in Nat Microbiol (2017)