Characterization of Antimicrobial Resistance Dissemination across Plasmid Communities Classified by Network Analysis

af Yamashita, Akifumi, Sekizuka, Tsuyoshi, Kuroda, Makoto
Udgivet i Pathogens (2014)

VirusTAP: Viral Genome-Targeted Assembly Pipeline

af Yamashita, Akifumi, Sekizuka, Tsuyoshi, Kuroda, Makoto
Udgivet i Front Microbiol (2016)

Pyrosequence Read Length of 16S rRNA Gene Affects Phylogenetic Assignment of Plant-associated Bacteria

af Okubo, Takashi, Ikeda, Seishi, Yamashita, Akifumi, Terasawa, Kimihiro, Minamisawa, Kiwamu
Udgivet 2012

Conventional culture methods with commercially available media unveil the presence of novel culturable bacteria

af Ito, Tamaki, Sekizuka, Tsuyoshi, Kishi, Norimi, Yamashita, Akifumi, Kuroda, Makoto
Udgivet i Gut Microbes (2018)

Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis

af Kinumaki, Akiko, Sekizuka, Tsuyoshi, Hamada, Hiromichi, Kato, Kengo, Yamashita, Akifumi, Kuroda, Makoto
Udgivet i Front Microbiol (2015)

DGV: Dengue Genographic Viewer

af Yamashita, Akifumi, Sakamoto, Tetsuya, Sekizuka, Tsuyoshi, Kato, Kengo, Takasaki, Tomohiko, Kuroda, Makoto
Udgivet i Front Microbiol (2016)

TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing

af Sekizuka, Tsuyoshi, Yamashita, Akifumi, Murase, Yoshiro, Iwamoto, Tomotada, Mitarai, Satoshi, Kato, Seiya, Kuroda, Makoto
Udgivet i PLoS One (2015)

Induction of Anti-influenza Immunity by Modified Green Fluorescent Protein (GFP) Carrying Hemagglutinin-derived Epitope Structure

af Inoue, Yuji, Kubota-Koketsu, Ritsuko, Yamashita, Akifumi, Nishimura, Mitsuhiro, Ideno, Shoji, Ono, Ken-ichiro, Okuno, Yoshinobu, Ikuta, Kazuyoshi
Udgivet 2013

Low Levels of Antibody-Dependent Enhancement in Vitro Using Viruses and Plasma from Dengue Patients

af Chaichana, Panjaporn, Okabayashi, Tamaki, Puiprom, Orapim, Sasayama, Mikiko, Sasaki, Tadahiro, Yamashita, Akifumi, Ramasoota, Pongrama, Kurosu, Takeshi, Ikuta, Kazuyoshi
Udgivet 2014

Characterization of the Pathogenicity of Streptococcus intermedius TYG1620 Isolated from a Human Brain Abscess Based on the Complete Genome Sequence with Transcriptome Analysis and...

af Hasegawa, Noriko, Sekizuka, Tsuyoshi, Sugi, Yutaka, Kawakami, Nobuhiro, Ogasawara, Yumiko, Kato, Kengo, Yamashita, Akifumi, Takeuchi, Fumihiko, Kuroda, Makoto
Udgivet i Infect Immun (2017)

Elucidation of quantitative structural diversity of remarkable rearrangement regions, shufflons, in IncI2 plasmids

af Sekizuka, Tsuyoshi, Kawanishi, Michiko, Ohnishi, Mamoru, Shima, Ayaka, Kato, Kengo, Yamashita, Akifumi, Matsui, Mari, Suzuki, Satowa, Kuroda, Makoto
Udgivet i Sci Rep (2017)

The Type III Secretion System of Bradyrhizobium japonicum USDA122 Mediates Symbiotic Incompatibility with Rj2 Soybean Plants

af Tsukui, Takahiro, Eda, Shima, Kaneko, Takakazu, Sato, Shusei, Okazaki, Shin, Kakizaki-Chiba, Kaori, Itakura, Manabu, Mitsui, Hisayuki, Yamashita, Akifumi, Terasawa, Kimihiro, Minamisawa, Kiwamu
Udgivet 2013

Molecular Evolution of HIV-1 CRF01_AE Env in Thai Patients

af Boonchawalit, Samatchaya, Jullaksorn, Duangrat, Uttiyoung, Jiraporn, Yowang, Amara, Krathong, Nongkran, Chautrakul, Sununta, Yamashita, Akifumi, Ikuta, Kazuyoshi, Roobsoong, Amornsak, Kanitvittaya, Sangkom, Sawanpanyalert, Pathom, Kameoka, Masanori
Udgivet 2011

Limited cross-reactivity of mouse monoclonal antibodies against Dengue virus capsid protein among four serotypes

af Noda, Megumi, Masrinoul, Promsin, Punkum, Chaweewan, Pipattanaboon, Chonlatip, Ramasoota, Pongrama, Setthapramote, Chayanee, Sasaki, Tadahiro, Sasayama, Mikiko, Yamashita, Akifumi, Kurosu, Takeshi, Ikuta, Kazuyoshi, Okabayashi, Tamaki
Udgivet 2012

Overcoming the pitfalls of automatic interpretation of whole genome sequencing data by online tools for the prediction of pyrazinamide resistance in Mycobacterium tuberculosis

af Iwamoto, Tomotada, Murase, Yoshiro, Yoshida, Shiomi, Aono, Akio, Kuroda, Makoto, Sekizuka, Tsuyoshi, Yamashita, Akifumi, Kato, Kengo, Takii, Takemasa, Arikawa, Kentaro, Kato, Seiya, Mitarai, Satoshi
Udgivet i PLoS One (2019)

Emerging Antigenic Variants at the Antigenic Site Sb in Pandemic A(H1N1)2009 Influenza Virus in Japan Detected by a Human Monoclonal Antibody

af Yasugi, Mayo, Kubota-Koketsu, Ritsuko, Yamashita, Akifumi, Kawashita, Norihito, Du, Anariwa, Misaki, Ryo, Kuhara, Motoki, Boonsathorn, Naphatsawan, Fujiyama, Kazuhito, Okuno, Yoshinobu, Nakaya, Takaaki, Ikuta, Kazuyoshi
Udgivet 2013

A Highly Conserved Region Between Amino Acids 221 and 266 of Dengue Virus Non-Structural Protein 1 Is a Major Epitope Region in Infected Patients

af Omokoko, Magot Diata, Pambudi, Sabar, Phanthanawiboon, Supranee, Masrinoul, Promsin, Setthapramote, Chayanee, Sasaki, Tadahiro, Kuhara, Motoki, Ramasoota, Pongrama, Yamashita, Akifumi, Hirai, Itaru, Ikuta, Kazuyoshi, Kurosu, Takeshi
Udgivet 2014

Prevalence of Colistin Resistance Gene mcr-1 and Absence of mcr-2 in Escherichia coli Isolated from Healthy Food-Producing Animals in Japan

af Kawanishi, Michiko, Abo, Hitoshi, Ozawa, Manao, Uchiyama, Mariko, Shirakawa, Takahiro, Suzuki, Satowa, Shima, Ayaka, Yamashita, Akifumi, Sekizuka, Tsuyoshi, Kato, Kengo, Kuroda, Makoto, Koike, Ryoji, Kijima, Mayumi
Udgivet i Antimicrob Agents Chemother (2016)

Molecular Evolution of the VP1 Gene in Human Norovirus GII.4 Variants in 1974–2015

af Motoya, Takumi, Nagasawa, Koo, Matsushima, Yuki, Nagata, Noriko, Ryo, Akihide, Sekizuka, Tsuyoshi, Yamashita, Akifumi, Kuroda, Makoto, Morita, Yukio, Suzuki, Yoshiyuki, Sasaki, Nobuya, Katayama, Kazuhiko, Kimura, Hirokazu
Udgivet i Front Microbiol (2017)

Whole-genome sequencing-based epidemiological analysis of anti-tuberculosis drug resistance genes in Japan in 2007: Application of the Genome Research for Asian Tuberculosis (GReAT...

af Takii, Takemasa, Seki, Kouhei, Wakabayashi, Yasutaka, Morishige, Yuta, Sekizuka, Tsuyoshi, Yamashita, Akifumi, Kato, Kengo, Uchimura, Kazuhiro, Ohkado, Akihiro, Keicho, Naoto, Mitarai, Satoshi, Kuroda, Makoto, Kato, Seiya
Udgivet i Sci Rep (2019)