'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens

Por Worby, Colin J., Read, Timothy D.
Publicado no PLoS One (2015)

On the Role of Different Age Groups and Pertussis Vaccines During the 2012 Outbreak in Wisconsin

Por Goldstein, Edward, Worby, Colin J, Lipsitch, Marc
Publicado no Open Forum Infect Dis (2018)

Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data

Por Worby, Colin J., Lipsitch, Marc, Hanage, William P.
Publicado em 2014

Shared Genomic Variants: Identification of Transmission Routes Using Pathogen Deep-Sequence Data

Por Worby, Colin J, Lipsitch, Marc, Hanage, William P
Publicado no Am J Epidemiol (2017)

Population effect of influenza vaccination under co-circulation of non-vaccine variants and the case for a bivalent A/H3N2 vaccine component

Por Worby, Colin J, Wallinga, Jacco, Lipsitch, Marc, Goldstein, Edward
Publicado no Epidemics (2017)

The Distribution of Pairwise Genetic Distances: A Tool for Investigating Disease Transmission

Por Worby, Colin J., Chang, Hsiao-Han, Hanage, William P., Lipsitch, Marc
Publicado no Genetics (2014)

Examining the role of different age groups, and of vaccination during the 2012 Minnesota pertussis outbreak

Por Worby, Colin J., Kenyon, Cynthia, Lynfield, Ruth, Lipsitch, Marc, Goldstein, Edward
Publicado no Sci Rep (2015)

Bayesian reconstruction of transmission within outbreaks using genomic variants

Por De Maio, Nicola, Worby, Colin J., Wilson, Daniel J., Stoesser, Nicole
Publicado no PLoS Comput Biol (2018)

On the relative role of different age groups in influenza epidemics

Por Worby, Colin J, Chaves, Sandra S, Wallinga, Jacco, Lipsitch, Marc, Finelli, Lyn, Goldstein, Edward
Publicado no Epidemics (2015)

Penicillin Resistance of Nonvaccine Type Pneumococcus before and after PCV13 Introduction, United States

Por Andam, Cheryl P., Worby, Colin J., Gierke, Ryan, McGee, Lesley, Pilishvili, Tamara, Hanage, William P.
Publicado no Emerg Infect Dis (2017)

On the Relative Role of Different Age Groups During Epidemics Associated With Respiratory Syncytial Virus

Por Goldstein, Edward, Nguyen, Hieu H, Liu, Patrick, Viboud, Cecile, Steiner, Claudia A, Worby, Colin J, Lipsitch, Marc
Publicado no J Infect Dis (2018)

Impact of mupirocin resistance on the transmission and control of healthcare-associated MRSA

Por Deeny, Sarah R., Worby, Colin J., Tosas Auguet, Olga, Cooper, Ben S., Edgeworth, Jonathan, Cookson, Barry, Robotham, Julie V.
Publicado no J Antimicrob Chemother (2015)

Estimating the Effectiveness of Isolation and Decolonization Measures in Reducing Transmission of Methicillin-resistant Staphylococcus aureus in Hospital General Wards

Por Worby, Colin J., Jeyaratnam, Dakshika, Robotham, Julie V., Kypraios, Theodore, O'Neill, Philip D., De Angelis, Daniela, French, Gary, Cooper, Ben S.
Publicado em 2013

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus

Por Chang, Hsiao-Han, Dordel, Janina, Donker, Tjibbe, Worby, Colin J., Feil, Edward J., Hanage, William P., Bentley, Stephen D., Huang, Susan S., Lipsitch, Marc
Publicado no Genome Med (2016)

Reconstructing transmission trees for communicable diseases using densely sampled genetic data

Por Worby, Colin J., O'Neill, Philip D., Kypraios, Theodore, Robotham, Julie V., De Angelis, Daniela, Cartwright, Edward J. P., Peacock, Sharon J., Cooper, Ben S.
Publicado no Ann Appl Stat (2016)

THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites

Por Chang, Hsiao-Han, Worby, Colin J., Yeka, Adoke, Nankabirwa, Joaniter, Kamya, Moses R., Staedke, Sarah G., Dorsey, Grant, Murphy, Maxwell, Neafsey, Daniel E., Jeffreys, Anna E., Hubbart, Christina, Rockett, Kirk A., Amato, Roberto, Kwiatkowski, Dominic P., Buckee, Caroline O., Greenhouse, Bryan
Publicado no PLoS Comput Biol (2017)