A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

由 Scharm, Martin, Waltemath, Dagmar
發表在 F1000Res (2016)

Combining computational models, semantic annotations and simulation experiments in a graph database

由 Henkel, Ron, Wolkenhauer, Olaf, Waltemath, Dagmar
發表在 Database (Oxford) (2015)

An algorithm to detect and communicate the differences in computational models describing biological systems

由 Scharm, Martin, Wolkenhauer, Olaf, Waltemath, Dagmar
發表在 Bioinformatics (2016)

COMODI: an ontology to characterise differences in versions of computational models in biology

由 Scharm, Martin, Waltemath, Dagmar, Mendes, Pedro, Wolkenhauer, Olaf
發表在 J Biomed Semantics (2016)

SED-ML web tools: generate, modify and export standard-compliant simulation studies

由 Bergmann, Frank T, Nickerson, David, Waltemath, Dagmar, Scharm, Martin
發表在 Bioinformatics (2017)

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation

由 Touré, Vasundra, Le Novère, Nicolas, Waltemath, Dagmar, Wolkenhauer, Olaf
發表在 PLoS Comput Biol (2018)

Annotation-based feature extraction from sets of SBML models

由 Alm, Rebekka, Waltemath, Dagmar, Wolfien, Markus, Wolkenhauer, Olaf, Henkel, Ron
發表在 J Biomed Semantics (2015)

Initiatives, Concepts, and Implementation Practices of FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles in Health Data Stewardship Practice: Protocol for a...

由 Inau, Esther Thea, Sack, Jean, Waltemath, Dagmar, Zeleke, Atinkut Alamirrew
發表在 JMIR Res Protoc (2021)

Ranked retrieval of Computational Biology models

由 Henkel, Ron, Endler, Lukas, Peters, Andre, Le Novère, Nicolas, Waltemath, Dagmar
出版 2010

Notions of similarity for systems biology models

由 Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
發表在 Brief Bioinform (2016)

Notions of similarity for systems biology models

由 Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
發表在 Brief Bioinform (2017)

Identifying frequent patterns in biochemical reaction networks: a workflow

由 Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron
發表在 Database (Oxford) (2018)

Open modeling and exchange (OMEX) metadata specification version 1.0

由 Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
發表在 J Integr Bioinform (2020)

Evolution of computational models in BioModels Database and the Physiome Model Repository

由 Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
發表在 BMC Syst Biol (2018)

STON: exploring biological pathways using the SBGN standard and graph databases

由 Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
發表在 BMC Bioinformatics (2016)

Towards standardization guidelines for in silico approaches in personalized medicine

由 Brunak, Søren, Bjerre Collin, Catherine, Eva Ó Cathaoir, Katharina, Golebiewski, Martin, Kirschner, Marc, Kockum, Ingrid, Moser, Heike, Waltemath, Dagmar
發表在 J Integr Bioinform (2020)

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

由 Bergmann, Frank T., Cooper, Jonathan, König, Matthias, Moraru, Ion, Nickerson, David, Le Novère, Nicolas, Olivier, Brett G., Sahle, Sven, Smith, Lucian, Waltemath, Dagmar
發表在 J Integr Bioinform (2018)

Specifications of Standards in Systems and Synthetic Biology

由 Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan
發表在 J Integr Bioinform (2015)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

由 Schreiber, Falk, Sommer, Björn, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
發表在 J Integr Bioinform (2019)

Specifications of standards in systems and synthetic biology: status and developments in 2020

由 Schreiber, Falk, Sommer, Björn, Czauderna, Tobias, Golebiewski, Martin, Gorochowski, Thomas E., Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
發表在 J Integr Bioinform (2020)